Centro de Investigación de la Biodiversidad y Cambio Climático

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Universidad Indoamérica

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Compiling and analyzing the non-native flora of a megadiverse Neotropical country: a new catalogue for continental Ecuador
(2025)
Ileana Herrera
;
Anahí Vargas
;
Kimberly Rizzo
;
Zhofre Aguirre
;
Isabella Dillon
In this study, we provide a comprehensive and updated inventory of the non-native vascular flora of continental Ecuador and analyze its key biogeographic and ecological attributes to inform biological invasion management. We recorded 486 non-native wild plant taxa, 52% of which are naturalized and 48% casual. This inventory was primarily based on secondary data (published literature, scientific reports, and online databases) and enriched through fieldwork and expert consultations. It includes information on taxonomy, life form, lifespan, origin, first year of record, and spatial-temporal distribution. The most represented families were Poaceae (16%), Asteraceae (10%), and Fabaceae (9%). About 60% of the taxa originated from Asia and/or Africa, and 67% are herbs. The earliest introductions date back to the late 18<jats:sup>th</jats:sup> century, with an exponential increase beginning in ca. 1915. Only 13% of the taxa have a minimum residence time exceeding 125 years. The Andes accounted for the highest number of taxa (93%, including taxa shared with other regions). Nearly 80% of the non-native taxa have documented uses, most commonly ornamental (42%) and medicinal (38%). Naturalized taxa tended to have longer residence times and more frequently reported uses than casual ones, suggesting these traits may influence naturalization likelihood. Due to limited systematic sampling across the country, particularly outside the Central Andes, some spatial bias may exist. However, the integration of citizen science-derived data, a methodological innovation in our study, proved to be a promising approach for addressing knowledge gaps and improving detection efforts in regions with limited research capacity. Our findings offer a foundation for advancing the management of biological invasions in Ecuador through early detection, rapid response (EDRR), and species prioritization. Finally, we provide a practical, adaptable and replicable framework, based on citizen science and appropriate statistical analyses, for developing national inventories of non-native plant species in data-deficient countries.</jats:p>
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Compiling and analyzing the non-native flora of a megadiverse Neotropical country: a new catalogue for continental Ecuador
(2025)
Ileana Herrera
;
Anahí Vargas
;
Kimberly Rizzo
;
Zhofre Aguirre
;
Isabella Dillon
In this study, we provide a comprehensive and updated inventory of the non-native vascular flora of continental Ecuador and analyze its key biogeographic and ecological attributes to inform biological invasion management. We recorded 486 non-native wild plant taxa, 52% of which are naturalized and 48% casual. This inventory was primarily based on secondary data (published literature, scientific reports, and online databases) and enriched through fieldwork and expert consultations. It includes information on taxonomy, life form, lifespan, origin, first year of record, and spatial-temporal distribution. The most represented families were Poaceae (16%), Asteraceae (10%), and Fabaceae (9%). About 60% of the taxa originated from Asia and/or Africa, and 67% are herbs. The earliest introductions date back to the late 18<jats:sup>th</jats:sup> century, with an exponential increase beginning in ca. 1915. Only 13% of the taxa have a minimum residence time exceeding 125 years. The Andes accounted for the highest number of taxa (93%, including taxa shared with other regions). Nearly 80% of the non-native taxa have documented uses, most commonly ornamental (42%) and medicinal (38%). Naturalized taxa tended to have longer residence times and more frequently reported uses than casual ones, suggesting these traits may influence naturalization likelihood. Due to limited systematic sampling across the country, particularly outside the Central Andes, some spatial bias may exist. However, the integration of citizen science-derived data, a methodological innovation in our study, proved to be a promising approach for addressing knowledge gaps and improving detection efforts in regions with limited research capacity. Our findings offer a foundation for advancing the management of biological invasions in Ecuador through early detection, rapid response (EDRR), and species prioritization. Finally, we provide a practical, adaptable and replicable framework, based on citizen science and appropriate statistical analyses, for developing national inventories of non-native plant species in data-deficient countries.
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Compiling and analyzing the non-native flora of a megadiverse Neotropical country: a new catalogue for continental Ecuador
(2025)
Ileana Herrera
;
Anahí Vargas
;
Kimberly Rizzo
;
Zhofre Aguirre
;
Isabella Dillon
In this study, we provide a comprehensive and updated inventory of the non-native vascular flora of continental Ecuador and analyze its key biogeographic and ecological attributes to inform biological invasion management. We recorded 486 non-native wild plant taxa, 52% of which are naturalized and 48% casual. This inventory was primarily based on secondary data (published literature, scientific reports, and online databases) and enriched through fieldwork and expert consultations. It includes information on taxonomy, life form, lifespan, origin, first year of record, and spatial-temporal distribution. The most represented families were Poaceae (16%), Asteraceae (10%), and Fabaceae (9%). About 60% of the taxa originated from Asia and/or Africa, and 67% are herbs. The earliest introductions date back to the late 18<jats:sup>th</jats:sup> century, with an exponential increase beginning in ca. 1915. Only 13% of the taxa have a minimum residence time exceeding 125 years. The Andes accounted for the highest number of taxa (93%, including taxa shared with other regions). Nearly 80% of the non-native taxa have documented uses, most commonly ornamental (42%) and medicinal (38%). Naturalized taxa tended to have longer residence times and more frequently reported uses than casual ones, suggesting these traits may influence naturalization likelihood. Due to limited systematic sampling across the country, particularly outside the Central Andes, some spatial bias may exist. However, the integration of citizen science-derived data, a methodological innovation in our study, proved to be a promising approach for addressing knowledge gaps and improving detection efforts in regions with limited research capacity. Our findings offer a foundation for advancing the management of biological invasions in Ecuador through early detection, rapid response (EDRR), and species prioritization. Finally, we provide a practical, adaptable and replicable framework, based on citizen science and appropriate statistical analyses, for developing national inventories of non-native plant species in data-deficient countries.
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First Insights into the Venom Composition of Two Ecuadorian Coral Snakes
(2022)
Hernández-Altamirano, J.A.
;
Salazar Valenzuela, David
;
Medina-Villamizar, E.J.
;
Quirola, D.R.
;
Patel, K.
Micrurus is a medically relevant genus of venomous snakes composed of 85 species. Bites caused by coral snakes are rare, but they are usually associated with very severe and life-threatening clinical manifestations. Ecuador is a highly biodiverse country with a complex natural environment, which is home to approximately 20% of identified Micrurus species. Additionally, it is on the list of Latin American countries with the highest number of snakebites. However, there is no local antivenom available against the Ecuadorian snake venoms, and the biochemistry of these venoms has been poorly explored. Only a limited number of samples collected in the country from the Viperidae family were recently characterised. Therefore, this study addressed the compositional patterns of two coral snake venoms from Ecuador, M. helleri and M. mipartitus, using venomics strategies, integrating sample fractionation, gel electrophoresis, and mass spectrometry. Chromatographic and electrophoretic profiles of these snake venoms revealed interspecific variability, which was ascertained by mass spectrometry. The two venoms followed the recently recognised dichotomic toxin expression trends displayed by Micrurus species: M. helleri venom contains a high proportion (72%) of phospholipase A2, whereas M. mipartitus venom is dominated by three-finger toxins (63%). A few additional protein families were also detected in these venoms. Overall, these results provide the first comprehensive views on the composition of two Ecuadorian coral snake venoms and expand the knowledge of Micrurus venom phenotypes. These findings open novel perspectives to further research the functional aspects of these biological cocktails of PLA2s and 3FTxs and stress the need for the preclinical evaluation of the currently used antivenoms for therapeutic purposes in Ecuador. © 2022 by the authors.
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Rainbow trout (Oncorhynchus mykiss) threaten Andean amphibians
(2016)
Martín-Torrijos L.
;
Sandoval-Sierra J.V.
;
Muñoz J.
;
Diéguez-Uribeondo J.
;
Bosch J.
Amphibian populations are declining due to a myriad of abiotic and biotic factors, including invasive species and pathogens. In temperate freshwater ecosystems, for example, amphibian populations are threatened by the predation of introduced salmonids. Salmonids not only directly predate upon amphibian eggs and larvae but may also transport deadly pathogens into freshwater systems. Though most research has focused on temperate systems, much less is known about the effects of introduced species in Neotropical streams. We conducted two experiments to investigate the impacts of rainbow trout (Oncorhynchus mykiss) in two Neotropical anurans. First, we assessed the effect of the rainbow trout on tadpole survivorship and morphology in Nymphargus grandisonae, a glassfrog species endemic of the Andes. Tadpoles of N. grandisonae were subjected to three treatments involving the absence of rainbow trout (control) and its presence with different types of chemical cues–kairomones (from rainbow trout) and cue alarms (from tadpole prey); the results show that the presence of rainbow trout affects the larval morphology of this glassfrog. In the second experiment, to test whether rainbow trout is a vector of the pathogenic freshwater mold Saprolegnia diclina (Oomycetes), eggs of Engystomops petersi were placed with infected and uninfected rainbow trout. There was a high mortality rate in the embryos of E. petersi exposed to trout infected with S. diclina. This represents the first evidence that rainbow trout may have a direct negative effect on Neotropical amphibian populations, and thus should be considered a threat. Management programs should be implemented to eradicate trout from Andean rivers, especially in areas with high number of endangered amphibians. © 2016, © 2016 The Author(s). Published by Taylor & Francis.
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Phylogeny of Weinmannia (Cunoniaceae) reveals the contribution of the southern extratropics to tropical Andean biodiversity
(2025)
Ricardo A. Segovia
;
Eduardo Aguirre-Mazzi
;
Christine E. Edwards
;
Alexander G. Linan
;
Alfredo Fuentes
The Andes are a relatively young mountain range with impressive biodiversity, but the biogeographic processes underlying its hyperdiversity are still being unraveled. Novel mid- to high-elevation climates may have served as a biological corridor for the immigration of temperate-adapted lineages to more equatorial latitudes, contributing unknown levels of diversity to this region. We tested the hypothesis that Weinmannia is a lineage of extratropical origin that recently reached and then diversified extensively in the tropical Andes. Using a 2bRAD seq approach to generate a time-calibrated phylogeny for the genus, we found that extratropical species were placed as sister to the rest of Weinmannia and that younger clades were distributed towards more equatorial latitudes. Although Weinmannia exhibited low niche conservatism in elevation and latitude, trait reconstructions of climatic variables showed that the common ancestor of Weinmannia occupied cool climates, with high conservatism of thermal and water availability niche across the phylogeny. Thus, Andean uplift likely created habitats with suitable environmental conditions, providing a dispersal route for extant Weinmannia to colonize the tropical Andes from the southern extratropics. These southern lineages likely converged with those originating in other tropical and extratropical centers of diversification, providing multiple origins for the hyperdiversity in the modern montane forests of the tropical Andes.
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NEOTROPICAL FRESHWATER FISHES: A dataset of occurrence and abundance of freshwater fishes in the Neotropics
(2023)
Tobes, Ibon
The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large-scale Neotropical freshwater fish inventory, covering the entire Neotropical region from Mexico and the Caribbean in the north to the southern limits in Argentina, Paraguay, Chile, and Uruguay. We compiled 185,787 distribution records, with unique georeferenced coordinates, for the 4225 species, represented by occurrence and abundance data. The number of species for the most numerous orders are as follows: Characiformes (1289), Siluriformes (1384), Cichliformes (354), Cyprinodontiformes (245), and Gymnotiformes (135). The most recorded species was the characid Astyanax fasciatus (4696 records). We registered 116,802 distribution records for native species, compared to 1802 distribution records for nonnative species. The main aim of the NEOTROPICAL FRESHWATER FISHES data set was to make these occurrence and abundance data accessible for international researchers to develop ecological and macroecological studies, from local to regional scales, with focal fish species, families, or orders. We anticipate that the NEOTROPICAL FRESHWATER FISHES data set will be valuable for studies on a wide range of ecological processes, such as trophic cascades, fishery pressure, the effects of habitat loss and fragmentation, and the impacts of species invasion and climate change. There are no copyright restrictions on the data, and please cite this data paper when using the data in publications. © 2022 The Ecological Society of America.
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Genotyping‐by‐sequencing informs conservation of Andean palms sources of non‐timber forest products
(2024)
Nicolás Peñafiel Loaiza
;
Abigail H. Chafe
;
Mónica Moraes R
;
Oleas Gallo, Nora Helena
;
Julissa Roncal
Conservation and sustainable management of lineages providing non‐timber forest products are imperative under the current global biodiversity loss. Most non‐timber forest species, however, lack genomic studies that characterize their intraspecific variation and evolutionary history, which inform species' conservation practices. Contrary to many lineages in the Andean biodiversity hotspot that exhibit high diversification, the genus <jats:italic>Parajubaea</jats:italic> (Arecaceae) has only three species despite the genus' origin 22 million years ago. Two of the three palm species, <jats:italic>P. torallyi</jats:italic> and <jats:italic>P. sunkha</jats:italic>, are non‐timber forest species endemic to the Andes of Bolivia and are listed as IUCN endangered. The third species, <jats:italic>P. cocoides</jats:italic>, is a vulnerable species with unknown wild populations. We investigated the evolutionary relationships of <jats:italic>Parajubaea</jats:italic> species and the genetic diversity and structure of wild Bolivian populations. Sequencing of five low‐copy nuclear genes (3753 bp) challenged the hypothesis that <jats:italic>P. cocoides</jats:italic> is a cultigen that originated from the wild Bolivian species. We further obtained up to 15,134 de novo single‐nucleotide polymorphism markers by genotyping‐by‐sequencing of 194 wild <jats:italic>Parajubaea</jats:italic> individuals. Our total DNA sequencing effort rejected the taxonomic separation of the two Bolivian species. As expected for narrow endemic species, we observed low genetic diversity, but no inbreeding signal. We found three genetic clusters shaped by geographic distance, which we use to propose three management units. Different percentages of missing genotypic data did not impact the genetic structure of populations. We use the management units to recommend in situ conservation by creating new protected areas, and ex situ conservation through seed collection.
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Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study
(2018)
Endara M.-J.
;
Coley P.D.
;
Wiggins N.L.
;
Forrister D.L.
;
Younkin G.C.
The need for species identification and taxonomic discovery has led to the development of innovative technologies for large-scale plant identification. DNA barcoding has been useful, but fails to distinguish among many species in species-rich plant genera, particularly in tropical regions. Here, we show that chemical fingerprinting, or ‘chemocoding’, has great potential for plant identification in challenging tropical biomes. Using untargeted metabolomics in combination with multivariate analysis, we constructed species-level fingerprints, which we define as chemocoding. We evaluated the utility of chemocoding with species that were defined morphologically and subject to next-generation DNA sequencing in the diverse and recently radiated neotropical genus Inga (Leguminosae), both at single study sites and across broad geographic scales. Our results show that chemocoding is a robust method for distinguishing morphologically similar species at a single site and for identifying widespread species across continental-scale ranges. Given that species are the fundamental unit of analysis for conservation and biodiversity research, the development of accurate identification methods is essential. We suggest that chemocoding will be a valuable additional source of data for a quick identification of plants, especially for groups where other methods fall short. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust
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Miscellaneous chorological, nomenclatural and taxonomic notes on Carex (Cyperaceae) from South America, including the description of three new species
(2026)
P. Muñoz-Schüler
;
J. I. Márquez-Corro
;
A. Cano
;
A. Camilo
;
M. Corvalán-Favereau
Despite the ongoing intensive efforts on disentangling the diversity of the genus Carex (Cyperaceae) in South America, there is much still to be accomplished. In this note we studied collections from some of the main South American and North American herbaria, new field collections, and observations from the citizen platform iNaturalist, to report chorological, nomenclatural, and taxonomic notes for 16 South American Carex species. These include comments on invasive species, novel national reports for five species, including the first report of Carex echinata to the continent, the clarification of the use of the name Carex peruviana and the exclusion of Carex vixdentata from the Peruvian flora, and the description of three new species from the Northern Andes and the Peruvian desert: Carex guaguarum Jim.Mejías & Muñoz-Schüler, Carex ros-desertum Jim.Mejías & Muñoz-Schüler (subg. Vignea, sect. Bracteosellae), and Carex via-montana A.Mor.Alons. & Jim.Mejías (subg. Psyllophorae, sect. Junciformes). © The Author(s) 2026.
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