Now showing 1 - 10 of 27
No Thumbnail Available
Publication

Why Do Some Lineages Radiate While Others Do Not? Perspectives for Future Research on Adaptive Radiations

2025 , Rishi De-Kayne , Rowan Schley , Julia M.I. Barth , Luke C. Campillo , Catalina Chaparro-Pedraza , Jahnavi Joshi , Walter Salzburger , Bert Van Bocxlaer , Darko D. Cotoras , Carmelo Fruciano , Anthony J. Geneva , Rosemary Gillespie , Joseph Heras , Stephan Koblmüller , Blake Matthews , Renske E. Onstein , Ole Seehausen , Pooja Singh , Erik I. Svensson , Salazar Valenzuela, David , Maarten P.M. Vanhove , Guinevere O.U. Wogan , Ryo Yamaguchi , Anne D. Yoder , José Cerca

Understanding the processes that drive phenotypic diversification and underpin speciation is key to elucidating how biodiversity has evolved. Although these processes have been studied across a wide array of clades, adaptive radiations (ARs), which are systems with multiple closely related species and broad phenotypic diversity, have been particularly fruitful for teasing apart the factors that drive and constrain diversification. As such, ARs have become popular candidate study systems for determining the extent to which ecological features, including aspects of organisms and the environment, and inter- and intraspecific interactions, led to evolutionary diversification. Despite substantial past empirical and theoretical work, understanding mechanistically how ARs evolve remains a major challenge. Here, we highlight a number of understudied components of the environment and of lineages themselves, which may help further our understanding of speciation and AR. We also outline some substantial remaining challenges to achieving a detailed understanding of adaptation, speciation, and the role of ecology in these processes. These major challenges include identifying factors that have a causative impact in promoting or constraining ARs, gaining a more holistic understanding of features of organisms and their environment that interact resulting in adaptation and speciation, and understanding whether the role of these organismal and environmental features varies throughout the radiation process. We conclude by providing perspectives on how future investigations into the AR process can overcome these challenges, allowing us to glean mechanistic insights into adaptation and speciation. This record is sourced from MEDLINE/PubMed, a database of the U.S. National Library of Medicine

No Thumbnail Available
Publication

Bothrops atrox from Ecuadorian Amazon: Initial analyses of venoms from individuals

2021 , Patiño R.S.P. , Salazar Valenzuela, David , Medina-Villamizar E. , Mendes B. , Proaño-Bolaños C. , da Silva S.L. , Almeida J.R.

Bothrops atrox is the most clinically relevant snake species within the Amazon region, which includes Ecuadorian territories. It comprises a large distribution, which could contribute to the genetic and venomic variation identified in the species. The high variability and protein isoform diversity of its venom are of medical interest, since it can influence the clinical manifestations caused by envenomation and its treatment. However, in Ecuador there is insufficient information on the diversity of venomic phenotypes, even of relevant species such as B. atrox. Here, we characterized the biochemical and toxicological profiles of the venom of six B. atrox individuals from the Ecuadorian Amazon. Differences in catalytic activities of toxins, elution profiles in liquid chromatography, electrophoretic patterns, and toxic effects among the analyzed samples were identified. Nonetheless, in the preclinical testing of antivenom, two samples from Mera (Pastaza) required a higher dose to achieve total neutralization of lethality and hemorrhage. Taken together, these data highlight the importance of analyzing individual venoms in studies focused on the outcomes of envenoming. © 2021 Elsevier Ltd

No Thumbnail Available
Publication

Online toolkits for collaborative and inclusive global research in urban evolutionary ecology

2024 , Amy M. Savage , Meredith J. Willmott , Pablo Moreno‐García , Zuzanna Jagiello , Daijiang Li , Anna Malesis , Lindsay S. Miles , Cristian Román‐Palacios , Salazar Valenzuela, David , Brian C. Verrelli , Kristin M. Winchell , Marina Alberti , Bonilla Bedoya, Santiago , Elizabeth Carlen , Cleo Falvey , Lauren Johnson , Ella Martin , Hanna Kuzyo , John Marzluff , Jason Munshi‐South , Megan Phifer‐Rixey , Ignacy Stadnicki , Marta Szulkin , Yuyu Zhou , Kiyoko M. Gotanda

Urban evolutionary ecology is inherently interdisciplinary. Moreover, it is a field with global significance. However, bringing researchers and resources together across fields and countries is challenging. Therefore, an online collaborative research hub, where common methods and best practices are shared among scientists from diverse geographic, ethnic, and career backgrounds would make research focused on urban evolutionary ecology more inclusive. Here, we describe a freely available online research hub for toolkits that facilitate global research in urban evolutionary ecology. We provide rationales and descriptions of toolkits for: (1) decolonizing urban evolutionary ecology; (2) identifying and fostering international collaborative partnerships; (3) common methods and freely-available datasets for trait mapping across cities; (4) common methods and freely-available datasets for cross-city evolutionary ecology experiments; and (5) best practices and freely available resources for public outreach and communication of research findings in urban evolutionary ecology. We outline how the toolkits can be accessed, archived, and modified over time in order to sustain long-term global research that will advance our understanding of urban evolutionary ecology.

No Thumbnail Available
Publication

Venom versatility: Dynamic anticoagulant and procoagulant variations between and within Bothrocophias (toad-head) and basal Bothrops (lance-head) pit vipers

2025 , Lachlan A. Bourke , Salazar Valenzuela, David , Marco Mancuso , Diego R. Quirola , Amaru Loaiza-Lange , Christina N. Zdenek , Matthew R. Lewin , Ernesto Arbeláez-Ortiz , Bryan G. Fry

Pinpointing the emergence of toxicological evolutionary novelties can be challenging. In American pit vipers, anticoagulant venoms are the paradigm, with a notable exception being the genus Bothrops, which are typically procoagulant. A recent study found that the basal Bothrops (B. pictus) is anticoagulant, raising two competing hypotheses: ancestral Bothrops were anticoagulant with procoagulant venom evolving later, or ancestral Bothrops were procoagulant with anticoagulant venom in B. pictus being a derived trait. To help resolve this, we tested venoms of the sister genus Bothrocophias for pathophysiological actions upon blood clotting. The Ecuadorian Bothrocophias venoms (B. campbelli, B. lojanus, and B. microphthalmus) were compared to Bothrops pictus. Both Bothrocophias lojanus and B. pictus inhibited various blood clotting enzymes, but B. pictus was more potently anticoagulant. Intriguingly, B. campbelli and B. microphthalmus were procoagulant. Both B. microphthalmus populations activated prothrombin, but Zamora Chinchipe locality also activated Factors X and VII. Bothrocophias campbelli showed a novel activity, using Factor Va in a calcium-dependent manner as a cofactor to activate prothrombin, the first time this has been shown for any viperid venom. Organismal phylogenetics failed to resolve the relative positions of B. campbelli and B. lojanus, thus we were unable to ascertain the ancestral trait. To resolve this, more phylogenetic research and venom testing with other Bothrocophias species is needed. Neutralisation tests revealed differential efficacy of PoliVal-ICP (Instituto Clodomiro Picado) and Soro Antibotrópico (Instituto Butantan) antivenoms. Together, these findings aid in designing evidence-based clinical-management strategies and provide foundational data for reconstructing venom evolution

No Thumbnail Available
Publication

A roadmap for harlequin frog systematics, with a partial revision of Amazonian species related to Atelopus spumarius

2025 , STEFAN LÖTTERS , PHILIPP BÖNING , SALVADOR BAILON , JOSE DANIEL BARROS CASTAÑEDA , RENAUD BOISTEL , ALESSANDRO CATENAZZI , JUAN C. CHAPARRO , GERMÁN CHÁVEZ , ANGEL CHUJUTALLI , LAURENT COEN , LUIS A. COLOMA , ANDREW J. CRAWFORD , JAIME CULEBRAS , JUAN CARLOS CUSI MARTÍNEZ , JUAN MANUEL DAZA , IGNACIO DE LA RIVA , DENISE J. ELLWEIN , RAFFAEL ERNST , SANDRA V. FLECHAS , ANTOINE FOUQUET , JUAN MANUEL GUAYASAMIN , CHRISTOPHER HEINE , RAFAEL F. JORGE , ALISHA JUNG , KARL-HEINZ JUNGFER , NATHALIE KAFFENBERGER , HENRIK KREHENWINKEL , ENRIQUE LA MARCA , MARGARITA LAMPO , GUIDO F. MEDINA RANGEL , LUDVIG ORSEN , DANIEL J. PALUH , JOSÉ LUIS PÉREZ GONZALEZ , JONATHAN PERRIN , AMANDA B. QUEZADA RIERA , JUAN PABLO REYES-PUIG , BERNARDO ROCA-REY ROSS , DANIELA C. RÖSSLER , LUIS ALBERTO RUEDA SOLANO , Salazar Valenzuela, David , JOSEFA CELSA SEÑARIS VAZQUEZ , MORGANE SOWINSKI , ANDREA TERÁN-VALDEZ , ANGIE TOVAR-ORTIZ , MICHAEL VEITH , PABLO VENEGAS , RUDOLF VON MAY , TIMM WEITKAMP , AMADEUS PLEWNIA

Harlequin frogs, genus Atelopus, are a species-rich group of bufonid anurans from the Neotropics with more than 100 species. For nearly four decades now, this group has suffered from massive population declines. Almost all species are threatened with extinction, and many populations and several species are considered extinct or possibly extinct. This results in a limited sampling available for studies on harlequin frog systematics, especially in terms of molecular genetic information. However, efficient conservation of harlequin frogs requires an improved taxonomy. This is further complicated through the circumstance that many Atelopus species are relatively poor in external morphological characters combined with a high level of intra-specific character variation (e.g. coloration and body size). At the same time, cryptic diversity exists with well differentiated species (supported by osteology and molecular genetics) almost indistinguishable by external morphology. We compiled the largest dataset to date for mitochondrial (12S, 16S, cyt b) and nuclear (POMC, RAG1) markers and present a phylogeny (likelihood and Bayesian inference methods) including 152 samples from 104 populations scattered over the entire geographic range of the genus. Four allo- or parapatric main clades are distinguished: I. Sierra Nevada; II. Venezuelan-Andean; III. Andean-Chocó-Central American (with the ignescens and the varius-longirostris clades); and IV Amazonian (containing the tricolor and the flavescens-spumarius clades). The phylogenetic relationships within these clades remain to be resolved. Taxonomic implications included both splitting and lumping, but taxonomic action is here only taken for populations related to A. spumarius from western Amazonia. Besides redescriptions of A. spumarius sensu stricto and A. colomai, we describe two new species based on morphology, skull osteology and bioacoustics. Additional yet understudied populations from Amazonia may be allocated to these species or may represent additional undescribed taxa.

No Thumbnail Available
Publication

A new species of pitviper of the genus Bothrops (Serpentes: Viperidae: Crotalinae) from the Central Andes of South America

2019 , Timms J. , Chaparro J.C. , Venegas P.J. , Salazar Valenzuela, David , Scrocchi G. , Cuevas J. , Leynaud G. , Carrasco P.A.

We describe a new species of montane pitviper of the genus Bothrops from the Cordillera Oriental of the Central Andes, distributed from southern Peru to central Bolivia. The new species can be distinguished from its congeners by the characteristic combination of a dorsal body color pattern consisting of triangular or subtriangular dark brown dorsal blotches, paired dark brown parallel occipital stripes, a conspicuous dark brown postocular stripe, the presence of canthorostrals in some specimens, prelacunal fused or partially fused with second supralabial, one scale usually separating internasals, rostral trapezoidal, two canthals oval to rounded, similar size or slightly larger than internasals, three or four medial intercanthals, eight to twelve intersupraoculars, intercanthals and intersupraoculars keeled and frequently slightly keeled, supraoculars oval, one to three suboculars, two to three postoculars, loreal subtriangular, two to six prefoveals, subfoveals absent, two or none postfoveals, one or two scales between suboculars and fourth supralabial, seven or eight supralabials, nine or eleven infralabials, 23-25 middorsal scales, 189-195 ventrals in females and 182-190 in males, 48-58 subcaudals in females and 54-63 in males, exceptionally undivided. The new species is apparently restricted to areas within Andean montane forests that are less humid and devoid of large trees. Copyright © 2019 Magnolia Press.

No Thumbnail Available
Publication

Feeding ecology of the Terciopelo pit viper snake (Bothrops asper) in Ecuador

2023 , Loaiza-Lange A. , Székely D , Torres-Carvajal O. , Tinoco N. , Salazar Valenzuela, David , Székely P.

Thoroughly documenting prey items and diet composition is crucial for understanding a predator’s role in the ecosystem. In gape restricted predators, such as snakes, documenting and analyzing the type and size of the prey is important to interpret their ecological role. We describe the diet patterns of a species of venomous snake, the Terciopelo pit viper (Bothrops asper), from its Ecuadorian populations. Examining the gastrointestinal contents of museum specimens collected over an extensive area of the Pacific lowlands of Ecuador, we encountered 69 identifiable prey items from four major taxonomic groups (amphibians, centipedes, mammals, and reptiles). We evaluated the observed composition of prey to check for differences between sexes and size-classes. To complement our observations of the Terciopelo species complex throughout their distribution, we carried out a systematic literature review. Our data show an ontogenetic shift in diet, with a transition from more diverse diet in juveniles towards a mammal-specialized diet in adults, and distinct proportion of prey taxa between the sexes in the juvenile size class. Copyright 2023 Loaiza-Lange et al.

No Thumbnail Available
Publication

First Insights into the Venom Composition of Two Ecuadorian Coral Snakes

2022 , Hernández-Altamirano, J.A. , Salazar Valenzuela, David , Medina-Villamizar, E.J. , Quirola, D.R. , Patel, K. , Vaiyapuri, S. , Lomonte, B. , Almeida, J.R.

Micrurus is a medically relevant genus of venomous snakes composed of 85 species. Bites caused by coral snakes are rare, but they are usually associated with very severe and life-threatening clinical manifestations. Ecuador is a highly biodiverse country with a complex natural environment, which is home to approximately 20% of identified Micrurus species. Additionally, it is on the list of Latin American countries with the highest number of snakebites. However, there is no local antivenom available against the Ecuadorian snake venoms, and the biochemistry of these venoms has been poorly explored. Only a limited number of samples collected in the country from the Viperidae family were recently characterised. Therefore, this study addressed the compositional patterns of two coral snake venoms from Ecuador, M. helleri and M. mipartitus, using venomics strategies, integrating sample fractionation, gel electrophoresis, and mass spectrometry. Chromatographic and electrophoretic profiles of these snake venoms revealed interspecific variability, which was ascertained by mass spectrometry. The two venoms followed the recently recognised dichotomic toxin expression trends displayed by Micrurus species: M. helleri venom contains a high proportion (72%) of phospholipase A2, whereas M. mipartitus venom is dominated by three-finger toxins (63%). A few additional protein families were also detected in these venoms. Overall, these results provide the first comprehensive views on the composition of two Ecuadorian coral snake venoms and expand the knowledge of Micrurus venom phenotypes. These findings open novel perspectives to further research the functional aspects of these biological cocktails of PLA2s and 3FTxs and stress the need for the preclinical evaluation of the currently used antivenoms for therapeutic purposes in Ecuador. © 2022 by the authors.

No Thumbnail Available
Publication

Systematics of south american snail-eating snakes (Serpentes, dipsadini), with the description of five new species from ecuador and peru

2018 , Arteaga A. , Salazar Valenzuela, David , Mebert K. , Peñafiel N. , Aguiar G. , Sánchez-Nivicela J.C. , Alexander Pyron R. , Colston T.J. , Cisneros-Heredia D.F. , Yánez-Muñoz M.H. , Venegas P.J. , Guayasamin, Juan M. , Torres-Carvajal O.

A molecular phylogeny of the Neotropical snail-eating snakes (tribe Dipsadini) is presented including 43 (24 for the first time) of the 77 species, sampled for both nuclear and mitochondrial genes. Morphological and phylogenetic support was found for four new species of Dipsas and one of Sibon, which are described here based on their unique combination of molecular, meristic, and color pattern characteristics. Sibynomorphus is designated as a junior subjective synonym of Dipsas. Dipsas latifrontalis and D. palmeri are resurrected from the synonymy of D. peruana. Dipsas latifasciata is transferred from the synonymy of D. peruana to the synonymy of D. palmeri. A new name, D. jamespetersi, is erected for the taxon currently known as Sibynomorphus petersi. Re-descriptions of D. latifrontalis and D. peruana are presented, as well as the first photographic voucher of an adult specimen of D. latifrontalis, along with photographs of all known Ecuadorian Dipsadini species. The first country record of D. variegata in Ecuador is provided and D. oligozonata removed from the list of Peruvian herpetofauna. With these changes, the number of Dipsadini reported in Ecuador increases to 22, 18 species of Dipsas and four of Sibon. © 2018, Pensoft Publishers. All rights reserved.

No Thumbnail Available
Publication

A mouth full of blood – autohaemorrhaging in three Ecuadorian snakes (Squamata: Colubridae & Tropidophiidae)

2023 , Rödel M.-O. , Loaiza-Lange A. , Penner J. , Neira-Salamea K.D. , Salazar Valenzuela, David

[No abstract available]